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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16623 and 16624 are separated by 677 nucleotides
16624 and 16625 are separated by 249 nucleotides
16625 and 16626 are separated by 571 nucleotides
16626 and 16627 are separated by 163 nucleotides
mRNA_8255: 16623 - K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase, at 777,687 to 778,914
16623
mRNA_8256: 16624 - K11324 DMAP1, SWC4, EAF2 DNA methyltransferase 1-associated protein 1, at 779,592 to 781,358
16624
mRNA_8257: 16625 - Hypothetical Protein, at 781,608 to 783,026
16625
mRNA_8258: 16626 - Hypothetical Protein, at 783,598 to 784,234
16626
mRNA_8259: 16627 - HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799, at 784,398 to 789,104
16627
Group
Condition
mRNA
_8255
mRNA
_8256
mRNA
_8257
mRNA
_8258
mRNA
_8259
16623
16624
16625
16626
16627
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.5
-0.9
+0.0
growth on ypd
YPD
-1.3
N.D.
-0.3
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.3
-0.6
+0.1
auxotrophy
YNB Glucose
-0.5
N.D.
+0.1
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.2
-0.0
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
+0.0
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
N.D.
+0.3
+0.6
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
+0.1
+1.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
+0.4
+1.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.2
+1.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
N.D.
-0.2
+0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
N.D.
-0.5
+0.7
+0.2
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