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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16626 and 16627 are separated by 163 nucleotides
16627 and 16628 are separated by 361 nucleotides
16628 and 16629 are separated by 399 nucleotides
16629 and 16630 are separated by 189 nucleotides
mRNA_8258: 16626 - Hypothetical Protein, at 783,598 to 784,234
16626
mRNA_8259: 16627 - HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799, at 784,398 to 789,104
16627
mRNA_8260: 16628 - KOG2354 RNA Polymerase C (III) 37 kDa subunit, at 789,466 to 790,634
16628
mRNA_8261: 16629 - KOG0714 Molecular chaperone (DnaJ superfamily), at 791,034 to 792,171
16629
mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792,361 to 796,882
16630
Group
Condition
mRNA
_8258
mRNA
_8259
mRNA
_8260
mRNA
_8261
mRNA
_8262
16626
16627
16628
16629
16630
auxotrophy
YNB Glucose
-0.4
-0.1
N.D.
-0.5
-3.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.6
-3.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
-0.4
-3.5
growth on oleic acid
YNB Glucose
-0.6
+0.1
N.D.
-0.2
-3.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
N.D.
-0.3
-2.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
-0.2
N.D.
+0.3
-3.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.4
-0.4
N.D.
+0.0
-3.6
growth on ricinoleic acid
YNB Glucose
-0.0
-0.0
N.D.
+0.1
-2.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
N.D.
-0.0
-2.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
-0.2
N.D.
-0.2
-3.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
N.D.
+0.2
-1.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.2
N.D.
-0.2
-2.0
auxotrophy
Dropout Complete
-0.3
+0.0
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
N.D.
-0.5
+0.2
growth on ypd
YPD
+0.2
+0.2
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.0
N.D.
+0.3
+0.6
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
N.D.
-0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.2
N.D.
+0.2
+0.2
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