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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16629 and 16630 are separated by 189 nucleotides
16630 and 16631 are separated by 765 nucleotides
16631 and 16632 are separated by 298 nucleotides
16632 and 16633 are separated by 264 nucleotides
mRNA_8261: 16629 - KOG0714 Molecular chaperone (DnaJ superfamily), at 791,034 to 792,171
16629
mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792,361 to 796,882
16630
mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797,648 to 800,551
16631
mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800,850 to 802,295
16632
mRNA_8265: 16633 - KOG0444 Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats), at 802,560 to 804,214
16633
Group
Condition
mRNA
_8261
mRNA
_8262
mRNA
_8263
mRNA
_8264
mRNA
_8265
16629
16630
16631
16632
16633
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-3.8
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-3.6
-0.5
+0.2
-0.1
auxotrophy
YNB Glucose
-0.5
-3.2
+0.2
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-3.2
+0.1
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-3.5
+0.2
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-3.2
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-3.0
-0.1
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-2.9
+0.6
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-2.4
+0.1
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-2.5
+0.2
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-2.0
-0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-1.9
-0.2
+0.1
-0.0
growth on ypd
YPD
-0.1
-0.4
+0.5
-0.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.2
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.3
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
-0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+0.0
+0.2
+0.1
auxotrophy
Dropout Complete
-0.4
-0.1
+0.6
+0.8
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.6
+0.3
-0.3
+0.2
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