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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16631 and 16632 are separated by 298 nucleotides
16632 and 16633 are separated by 264 nucleotides
16633 and 16634 are separated by 780 nucleotides
16634 and 16635 are separated by 435 nucleotides
mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797,648 to 800,551
16631
mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800,850 to 802,295
16632
mRNA_8265: 16633 - KOG0444 Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats), at 802,560 to 804,214
16633
mRNA_8266: 16634 - K07297 ADIPOR adiponectin receptor, at 804,995 to 806,356
16634
mRNA_8267: 16635 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 806,792 to 809,289
16635
Group
Condition
mRNA
_8263
mRNA
_8264
mRNA
_8265
mRNA
_8266
mRNA
_8267
16631
16632
16633
16634
16635
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.3
-1.9
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.2
-1.3
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.1
-1.8
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
-0.1
-1.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.1
-0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.0
-1.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
-0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
-0.2
-1.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
+0.1
-0.5
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.0
+0.2
-0.3
-0.4
auxotrophy
YNB Glucose
+0.2
-0.0
-0.2
-0.8
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.4
-0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.1
-0.9
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.3
-0.8
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
-0.1
-0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.1
-0.7
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
+0.2
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.0
+0.5
+0.3
growth on ypd
YPD
+0.5
-0.5
-0.3
+0.3
+0.9
auxotrophy
Dropout Complete
+0.6
+0.8
+0.1
-0.3
+0.4
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