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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16632 and 16633 are separated by 264 nucleotides
16633 and 16634 are separated by 780 nucleotides
16634 and 16635 are separated by 435 nucleotides
16635 and 16636 are separated by 359 nucleotides
mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800,850 to 802,295
16632
mRNA_8265: 16633 - KOG0444 Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats), at 802,560 to 804,214
16633
mRNA_8266: 16634 - K07297 ADIPOR adiponectin receptor, at 804,995 to 806,356
16634
mRNA_8267: 16635 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 806,792 to 809,289
16635
mRNA_8268: 16636 - K11511 APITD1, CENPS, MHF1 centromere protein S, at 809,649 to 810,847
16636
Group
Condition
mRNA
_8264
mRNA
_8265
mRNA
_8266
mRNA
_8267
mRNA
_8268
16632
16633
16634
16635
16636
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
-1.3
-1.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
-1.9
-0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
-1.8
-0.7
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-1.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-1.2
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-0.9
-0.0
-0.1
auxotrophy
YNB Glucose
-0.0
-0.2
-0.8
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
-0.4
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.5
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.4
-0.4
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-1.3
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.0
+0.2
-0.3
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.5
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.9
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.5
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
-0.8
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.6
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-0.7
+0.6
+0.1
growth on ypd
YPD
-0.5
-0.3
+0.3
+0.9
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.5
+0.3
-0.1
auxotrophy
Dropout Complete
+0.8
+0.1
-0.3
+0.4
-0.0
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