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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16635 and 16636 are separated by 359 nucleotides
16636 and 16637 are separated by 63 nucleotides
16637 and 16638 are separated by 281 nucleotides
16638 and 16639 are separated by 390 nucleotides
mRNA_8267: 16635 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 806,792 to 809,289
16635
mRNA_8268: 16636 - K11511 APITD1, CENPS, MHF1 centromere protein S, at 809,649 to 810,847
16636
mRNA_8269: 16637 - Hypothetical Protein, at 810,911 to 812,187
16637
mRNA_8270: 16638 - Hypothetical Protein, at 812,469 to 813,656
16638
mRNA_8271: 16639 - K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5, at 814,047 to 815,109
16639
Group
Condition
mRNA
_8267
mRNA
_8268
mRNA
_8269
mRNA
_8270
mRNA
_8271
16635
16636
16637
16638
16639
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.0
-0.3
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.4
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
-0.7
+0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.2
-0.6
+0.0
+0.2
auxotrophy
YNB Glucose
+0.3
-0.3
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.4
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.1
-0.4
+0.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.2
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.4
-0.2
+0.4
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
+0.0
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
-0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
-0.4
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.7
-0.1
-0.1
auxotrophy
Dropout Complete
+0.4
-0.0
+0.3
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
+0.4
+0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.5
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
+0.5
+0.3
-0.1
growth on ypd
YPD
+0.9
-0.2
+0.4
+0.7
+0.1
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