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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16637 and 16638 are separated by 281 nucleotides
16638 and 16639 are separated by 390 nucleotides
16639 and 16640 are separated by 338 nucleotides
16640 and 16641 are separated by 342 nucleotides
mRNA_8269: 16637 - Hypothetical Protein, at 810,911 to 812,187
16637
mRNA_8270: 16638 - Hypothetical Protein, at 812,469 to 813,656
16638
mRNA_8271: 16639 - K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5, at 814,047 to 815,109
16639
mRNA_8272: 16640 - K07750 E1.14.13.72, SC4MOL, ERG25 methylsterol monooxygenase, at 815,448 to 817,149
16640
mRNA_8273: 16641 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 817,492 to 819,082
16641
Group
Condition
mRNA
_8269
mRNA
_8270
mRNA
_8271
mRNA
_8272
mRNA
_8273
16637
16638
16639
16640
16641
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.5
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
+0.3
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.4
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.3
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.4
+0.7
+0.1
N.D.
N.D.
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