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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16641 and 16642 are separated by 427 nucleotides
16642 and 16643 are separated by 212 nucleotides
16643 and 16644 are separated by 511 nucleotides
16644 and 16645 are separated by 153 nucleotides
mRNA_8273: 16641 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 817,492 to 819,082
16641
mRNA_8274: 16642 - KOG4080 Mitochondrial ribosomal protein L32, at 819,510 to 820,015
16642
mRNA_8275: 16643 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 820,228 to 822,470
16643
mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822,982 to 824,358
16644
mRNA_8277: 16645 - Hypothetical Protein, at 824,512 to 825,100
16645
Group
Condition
mRNA
_8273
mRNA
_8274
mRNA
_8275
mRNA
_8276
mRNA
_8277
16641
16642
16643
16644
16645
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-1.4
-0.8
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.9
-1.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-1.3
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.8
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-1.1
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.9
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.1
+0.7
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-1.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.3
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.7
+0.9
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.6
-0.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.3
+1.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.2
+0.4
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.8
+0.4
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+1.1
+0.7
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