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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16644 and 16645 are separated by 153 nucleotides
16645 and 16646 are separated by 261 nucleotides
16646 and 16647 are separated by 818 nucleotides
16647 and 16648 are separated by 296 nucleotides
mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822,982 to 824,358
16644
mRNA_8277: 16645 - Hypothetical Protein, at 824,512 to 825,100
16645
mRNA_8278: 16646 - K16330 K16330 pseudouridylate synthase / pseudouridine kinase, at 825,362 to 828,181
16646
mRNA_8279: 16647 - BLAST Type-1 angiotensin II receptor-associated protein [Ch..., at 829,000 to 829,923
16647
mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830,220 to 831,668
16648
Group
Condition
mRNA
_8276
mRNA
_8277
mRNA
_8278
mRNA
_8279
mRNA
_8280
16644
16645
16646
16647
16648
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.5
+0.0
-0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
-0.2
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.2
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.7
-0.2
+0.5
N.D.
auxotrophy
Dropout Complete
+0.3
-0.8
+0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.7
-0.3
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.8
-0.4
-0.4
N.D.
growth on ypd
YPD
+0.1
+0.1
+0.1
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.3
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.4
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
+0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.7
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.2
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
-0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
+0.0
-0.4
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+1.1
+0.7
-0.1
+0.2
N.D.
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