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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16646 and 16647 are separated by 818 nucleotides
16647 and 16648 are separated by 296 nucleotides
16648 and 16649 are separated by 567 nucleotides
16649 and 16650 are separated by 126 nucleotides
mRNA_8278: 16646 - K16330 K16330 pseudouridylate synthase / pseudouridine kinase, at 825,362 to 828,181
16646
mRNA_8279: 16647 - BLAST Type-1 angiotensin II receptor-associated protein [Ch..., at 829,000 to 829,923
16647
mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830,220 to 831,668
16648
mRNA_8281: 16649 - Hypothetical Protein, at 832,236 to 832,909
16649
mRNA_8282: 16650 - K11359 SPT7 transcriptional activator SPT7, at 833,036 to 836,352
16650
Group
Condition
mRNA
_8278
mRNA
_8279
mRNA
_8280
mRNA
_8281
mRNA
_8282
16646
16647
16648
16649
16650
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-1.1
N.D.
+0.8
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.9
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.4
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
N.D.
-0.7
-0.5
growth on ypd
YPD
+0.1
-0.8
N.D.
+0.3
-0.6
growth on oleic acid
YNB Glucose
-0.2
-0.2
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.5
N.D.
+1.3
-1.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.5
N.D.
+0.7
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
N.D.
+0.5
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
N.D.
-0.9
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
N.D.
-0.3
+0.5
auxotrophy
Dropout Complete
+0.1
-0.5
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.6
N.D.
-0.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
N.D.
-0.2
+0.4
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
-0.1
+1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
N.D.
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.5
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.5
N.D.
+0.5
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
-0.3
+1.2
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