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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16648 and 16649 are separated by 567 nucleotides
16649 and 16650 are separated by 126 nucleotides
16650 and 16651 are separated by 1215 nucleotides
16651 and 16652 are separated by 408 nucleotides
mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830,220 to 831,668
16648
mRNA_8281: 16649 - Hypothetical Protein, at 832,236 to 832,909
16649
mRNA_8282: 16650 - K11359 SPT7 transcriptional activator SPT7, at 833,036 to 836,352
16650
mRNA_8283: 16651 - HMMPfam-Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region-PF00645,PRINTS-Histone H5 signature-PR00624,ProSiteProfiles-Poly(ADP-ribose) polymerase zinc finger domain profile.-PS50064,SUPERFAMILY--SSF57716, at 837,568 to 839,019
16651
mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839,428 to 840,649
16652
Group
Condition
mRNA
_8280
mRNA
_8281
mRNA
_8282
mRNA
_8283
mRNA
_8284
16648
16649
16650
16651
16652
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
-0.5
+0.1
-0.3
growth on ypd
YPD
N.D.
+0.3
-0.6
-0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.7
-0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.1
-0.6
-0.7
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.4
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.3
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
-1.7
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
-0.8
+0.4
-0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.4
-0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.1
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
-0.8
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
+0.7
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.3
-1.2
+0.6
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.3
+0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.4
-0.1
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.0
+0.3
+0.8
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.5
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
-0.2
+0.5
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
+0.3
+0.4
auxotrophy
YNB Glucose
N.D.
-0.1
+1.0
-0.0
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+1.2
+0.3
+0.3
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