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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16650 and 16651 are separated by 1215 nucleotides
16651 and 16652 are separated by 408 nucleotides
16652 and 16653 are separated by 493 nucleotides
16653 and 16654 are separated by 469 nucleotides
mRNA_8282: 16650 - K11359 SPT7 transcriptional activator SPT7, at 833,036 to 836,352
16650
mRNA_8283: 16651 - HMMPfam-Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region-PF00645,PRINTS-Histone H5 signature-PR00624,ProSiteProfiles-Poly(ADP-ribose) polymerase zinc finger domain profile.-PS50064,SUPERFAMILY--SSF57716, at 837,568 to 839,019
16651
mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839,428 to 840,649
16652
mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841,143 to 845,451
16653
mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845,921 to 849,990
16654
Group
Condition
mRNA
_8282
mRNA
_8283
mRNA
_8284
mRNA
_8285
mRNA
_8286
16650
16651
16652
16653
16654
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.4
-0.8
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.7
+0.4
-0.1
N.D.
-0.4
growth on ypd
YPD
-0.6
-0.4
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
-0.4
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.2
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.4
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.5
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.2
+0.6
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
-0.3
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.6
-0.7
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.6
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
+0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.5
+0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.1
+0.5
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.8
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.0
+0.3
+0.8
N.D.
+0.1
auxotrophy
Dropout Complete
+0.3
+0.3
+0.4
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.2
+0.6
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.5
N.D.
+0.4
auxotrophy
YNB Glucose
+1.0
-0.0
+0.4
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+1.2
+0.3
+0.3
N.D.
+0.6
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