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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16652 and 16653 are separated by 493 nucleotides
16653 and 16654 are separated by 469 nucleotides
16654 and 16655 are separated by 862 nucleotides
16655 and 16656 are separated by 569 nucleotides
mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839,428 to 840,649
16652
mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841,143 to 845,451
16653
mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845,921 to 849,990
16654
mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850,853 to 852,932
16655
mRNA_8288: 16656 - KOG4135 Predicted phosphoglucosamine acetyltransferase, at 853,502 to 854,309
16656
Group
Condition
mRNA
_8284
mRNA
_8285
mRNA
_8286
mRNA
_8287
mRNA
_8288
16652
16653
16654
16655
16656
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
-0.9
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.5
-0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.1
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.4
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.4
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.1
-0.8
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.1
-0.1
-0.1
growth on ypd
YPD
-0.4
N.D.
-0.1
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.4
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.7
N.D.
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.3
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.3
+0.2
-0.1
growth on oleic acid
YNB Glucose
+0.8
N.D.
+0.1
-0.6
-0.0
auxotrophy
YNB Glucose
+0.4
N.D.
+0.3
-0.4
+0.2
auxotrophy
Dropout Complete
+0.4
N.D.
+0.0
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
+0.3
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.3
-0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
+0.4
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.6
-0.5
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
+0.2
-0.1
+0.5
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