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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16654 and 16655 are separated by 862 nucleotides
16655 and 16656 are separated by 569 nucleotides
16656 and 16657 are separated by 1761 nucleotides
16657 and 16658 are separated by 278 nucleotides
mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845,921 to 849,990
16654
mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850,853 to 852,932
16655
mRNA_8288: 16656 - KOG4135 Predicted phosphoglucosamine acetyltransferase, at 853,502 to 854,309
16656
mRNA_8289: 16657 - KOG1601 GATA-4/5/6 transcription factors, at 856,071 to 857,914
16657
mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858,193 to 863,054
16658
Group
Condition
mRNA
_8286
mRNA
_8287
mRNA
_8288
mRNA
_8289
mRNA
_8290
16654
16655
16656
16657
16658
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.3
-0.3
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-0.6
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
+0.1
-1.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.1
-0.1
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.6
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.6
+0.0
-0.0
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
-0.5
+0.5
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.5
-0.1
+1.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.4
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose
+0.3
-0.4
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.1
+1.5
N.D.
auxotrophy
Dropout Complete
+0.0
-0.2
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
-0.0
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.8
+0.2
+1.6
N.D.
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