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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16656 and 16657 are separated by 1761 nucleotides
16657 and 16658 are separated by 278 nucleotides
16658 and 16659 are separated by 214 nucleotides
16659 and 16660 are separated by 475 nucleotides
mRNA_8288: 16656 - KOG4135 Predicted phosphoglucosamine acetyltransferase, at 853,502 to 854,309
16656
mRNA_8289: 16657 - KOG1601 GATA-4/5/6 transcription factors, at 856,071 to 857,914
16657
mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858,193 to 863,054
16658
mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863,269 to 864,250
16659
mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864,726 to 865,561
16660
Group
Condition
mRNA
_8288
mRNA
_8289
mRNA
_8290
mRNA
_8291
mRNA
_8292
16656
16657
16658
16659
16660
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.5
N.D.
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
N.D.
-0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
N.D.
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.3
N.D.
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.5
-0.5
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.0
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.5
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
N.D.
-0.2
+0.2
growth on ypd
YPD
+0.2
-0.1
N.D.
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
N.D.
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.2
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose
+0.2
+0.2
N.D.
-0.0
+0.3
auxotrophy
Dropout Complete
+0.3
+0.2
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.7
N.D.
+0.7
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+1.2
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.5
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.6
N.D.
+0.0
-0.0
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