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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16658 and 16659 are separated by 214 nucleotides
16659 and 16660 are separated by 475 nucleotides
16660 and 16661 are separated by 275 nucleotides
16661 and 16662 are separated by 924 nucleotides
mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858,193 to 863,054
16658
mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863,269 to 864,250
16659
mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864,726 to 865,561
16660
mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865,837 to 868,084
16661
mRNA_8294: 16662 - Hypothetical Protein, at 869,009 to 869,206
16662
Group
Condition
mRNA
_8290
mRNA
_8291
mRNA
_8292
mRNA
_8293
mRNA
_8294
16658
16659
16660
16661
16662
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.3
-0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
-0.5
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
+0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.2
+0.2
+0.2
growth on ypd
YPD
N.D.
-0.1
+0.3
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.1
+0.3
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.3
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-0.0
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
+0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.7
+0.0
+0.3
-0.2
auxotrophy
YNB Glucose
N.D.
-0.0
+0.3
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.0
+0.8
+0.4
auxotrophy
Dropout Complete
N.D.
+0.2
+0.1
+0.4
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.2
+0.6
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.3
+0.4
+0.5
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