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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16668 and 16669 are separated by 144 nucleotides
16669 and 16670 are separated by 204 nucleotides
16670 and 16671 are separated by 1358 nucleotides
16671 and 16672 are separated by 544 nucleotides
mRNA_8300: 16668 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13640,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SMART-Prolyl 4-hydroxylase alpha subunit homologues.-SM00702, at 881,221 to 882,082
16668
mRNA_8301: 16669 - K20361 USO1 intracellular protein transport protein USO1, at 882,227 to 887,090
16669
mRNA_8302: 16670 - HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473, at 887,295 to 889,058
16670
mRNA_8303: 16671 - KOG1398 Uncharacterized conserved protein, at 890,417 to 892,180
16671
mRNA_8304: 16672 - K01336 E3.4.21.48 cerevisin, at 892,725 to 894,788
16672
Group
Condition
mRNA
_8300
mRNA
_8301
mRNA
_8302
mRNA
_8303
mRNA
_8304
16668
16669
16670
16671
16672
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.5
-0.3
-2.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
-0.1
-1.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.5
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.6
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.3
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.2
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.5
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.5
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.3
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.4
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
-0.0
-0.4
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.1
+0.1
auxotrophy
YNB Glucose
+0.0
N.D.
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.2
+0.6
-0.2
auxotrophy
Dropout Complete
-0.0
N.D.
+0.0
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.0
+0.1
-0.0
growth on ypd
YPD
+0.2
N.D.
+0.0
+0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.3
+0.1
+0.2
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