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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16674 and 16675 are separated by 390 nucleotides
16675 and 16676 are separated by 323 nucleotides
16676 and 16677 are separated by 107 nucleotides
16677 and 16678 are separated by 426 nucleotides
mRNA_8306: 16674 - Hypothetical Protein, at 897,050 to 897,488
16674
mRNA_8307: 16675 - Hypothetical Protein, at 897,879 to 899,223
16675
mRNA_8308: 16676 - ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 899,547 to 900,613
16676
mRNA_8309: 16677 - K06965 PELO, DOM34, pelA protein pelota, at 900,721 to 902,755
16677
mRNA_8310: 16678 - K18752 TNPO1, IPO2, KPNB2 transportin-1, at 903,182 to 906,312
16678
Group
Condition
mRNA
_8306
mRNA
_8307
mRNA
_8308
mRNA
_8309
mRNA
_8310
16674
16675
16676
16677
16678
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-1.5
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-1.3
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.0
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.7
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.5
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.7
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.5
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.3
-0.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.7
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.8
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.6
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.6
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+1.3
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+1.3
+0.2
N.D.
N.D.
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