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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16680 and 16681 are separated by 222 nucleotides
16681 and 16682 are separated by 933 nucleotides
16682 and 16683 are separated by 626 nucleotides
16683 and 16684 are separated by 108 nucleotides
mRNA_8312: 16680 - K17868 DPH7, RRT2 diphthine methyl ester acylhydrolase, at 907,678 to 909,336
16680
mRNA_8313: 16681 - K11541 URA2 carbamoyl-phosphate synthase / aspartate carbamoyltransferase, at 909,559 to 916,766
16681
mRNA_8314: 16682 - K03321 TC.SULP sulfate permease, SulP family, at 917,700 to 921,050
16682
mRNA_8315: 16683 - Hypothetical Protein, at 921,677 to 922,300
16683
mRNA_8316: 16684 - KOG2923 Uncharacterized conserved protein, at 922,409 to 922,756
16684
Group
Condition
mRNA
_8312
mRNA
_8313
mRNA
_8314
mRNA
_8315
mRNA
_8316
16680
16681
16682
16683
16684
auxotrophy
YNB Glucose
-0.9
N.D.
-0.4
-0.6
-1.8
auxotrophy
YNB Glucose 75mM Methionine
-1.2
N.D.
-0.3
-0.2
-1.7
auxotrophy
YNB Glucose 75mM Arginine
-1.1
N.D.
-0.2
-0.4
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
N.D.
-0.0
+0.1
-1.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
N.D.
+0.1
-0.1
-0.8
growth on ricinoleic acid
YNB Glucose
-0.6
N.D.
-0.1
-0.1
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.1
-0.2
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
+0.1
+0.0
-1.1
auxotrophy
Dropout Complete
-1.0
N.D.
+0.1
-0.2
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.4
-0.3
-1.8
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.1
+0.2
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.2
-0.1
-1.2
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.1
+0.3
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.3
+0.2
-1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.0
+0.1
-1.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.2
-0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.1
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.4
+0.2
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.7
+0.2
-0.6
growth on ypd
YPD
+0.3
N.D.
-0.0
+0.2
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.0
+0.1
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