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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16684 and 16685 are separated by 604 nucleotides
16685 and 16686 are separated by 315 nucleotides
16686 and 16687 are separated by 513 nucleotides
16687 and 16688 are separated by 136 nucleotides
mRNA_8316: 16684 - KOG2923 Uncharacterized conserved protein, at 922,409 to 922,756
16684
mRNA_8317: 16685 - Hypothetical Protein, at 923,361 to 925,022
16685
mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925,338 to 930,210
16686
mRNA_8319: 16687 - HMMPfam-Protein of unknown function (DUF2370)-PF10176, at 930,724 to 932,736
16687
mRNA_8320: 16688 - KOG1516 Carboxylesterase and related proteins, at 932,873 to 935,850
16688
Group
Condition
mRNA
_8316
mRNA
_8317
mRNA
_8318
mRNA
_8319
mRNA
_8320
16684
16685
16686
16687
16688
facs on lipid accumulation
Sorted No BODIPY Gate
-1.7
-1.0
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.5
-0.3
-0.8
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.4
-0.4
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.7
-0.9
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.8
-0.7
-0.1
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
-0.5
+0.8
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-0.6
-0.2
-0.2
+0.3
growth on oleic acid
YNB Glucose
-1.7
-0.4
+0.4
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-1.5
-0.5
+0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.3
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-1.5
-0.4
+0.4
+0.1
-0.1
auxotrophy
YNB Glucose
-1.8
-0.0
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.4
+0.8
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.7
+0.3
+0.2
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.7
+0.3
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.2
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.1
-0.3
-0.5
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.1
-0.0
+0.1
+0.0
auxotrophy
Dropout Complete
-0.9
+0.1
+0.5
+0.0
+0.0
growth on ypd
YPD
-1.0
+1.0
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.0
-0.0
+0.1
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