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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16686 and 16687 are separated by 513 nucleotides
16687 and 16688 are separated by 136 nucleotides
16688 and 16689 are separated by 437 nucleotides
16689 and 16690 are separated by 304 nucleotides
mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925,338 to 930,210
16686
mRNA_8319: 16687 - HMMPfam-Protein of unknown function (DUF2370)-PF10176, at 930,724 to 932,736
16687
mRNA_8320: 16688 - KOG1516 Carboxylesterase and related proteins, at 932,873 to 935,850
16688
mRNA_8321: 16689 - Hypothetical Protein, at 936,288 to 937,256
16689
mRNA_8322: 16690 - Hypothetical Protein, at 937,561 to 938,825
16690
Group
Condition
mRNA
_8318
mRNA
_8319
mRNA
_8320
mRNA
_8321
mRNA
_8322
16686
16687
16688
16689
16690
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
-0.0
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.0
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.8
+0.0
+0.1
N.D.
growth on ypd
YPD
-0.0
-0.1
+0.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.5
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
+0.6
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose
+0.3
+0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.3
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.1
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.5
+0.0
+0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.1
+0.6
N.D.
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