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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16690 and 16691 are separated by 159 nucleotides
16691 and 16692 are separated by 155 nucleotides
16692 and 16693 are separated by 560 nucleotides
16693 and 16694 are separated by 810 nucleotides
mRNA_8322: 16690 - Hypothetical Protein, at 937,561 to 938,825
16690
mRNA_8323: 16691 - HMMPfam-Abscisic acid G-protein coupled receptor-PF12430,HMMPfam-Protein of unknown function (DUF3735)-PF12537, at 938,985 to 941,043
16691
mRNA_8324: 16692 - K14026 SEL1, SEL1L SEL1 protein, at 941,199 to 945,074
16692
mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945,635 to 946,237
16693
mRNA_8326: 16694 - Hypothetical Protein, at 947,048 to 947,790
16694
Group
Condition
mRNA
_8322
mRNA
_8323
mRNA
_8324
mRNA
_8325
mRNA
_8326
16690
16691
16692
16693
16694
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
-3.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-0.8
-1.8
-0.1
growth on ypd
YPD
N.D.
+0.2
-0.2
-1.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-1.0
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
-1.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-1.0
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.8
-0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.7
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.7
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.6
-0.7
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.4
-0.5
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
+0.6
-0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.5
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.2
-0.3
+0.5
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.7
+0.4
-0.2
auxotrophy
Dropout Complete
N.D.
+0.1
-0.7
+0.7
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.9
+1.2
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
-0.6
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
+0.7
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.4
+0.9
+0.1
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