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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16692 and 16693 are separated by 560 nucleotides
16693 and 16694 are separated by 810 nucleotides
16694 and 16695 are separated by 578 nucleotides
16695 and 16696 are separated by 186 nucleotides
mRNA_8324: 16692 - K14026 SEL1, SEL1L SEL1 protein, at 941,199 to 945,074
16692
mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945,635 to 946,237
16693
mRNA_8326: 16694 - Hypothetical Protein, at 947,048 to 947,790
16694
mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948,369 to 949,936
16695
mRNA_8328: 16696 - Hypothetical Protein, at 950,123 to 950,641
16696
Group
Condition
mRNA
_8324
mRNA
_8325
mRNA
_8326
mRNA
_8327
mRNA
_8328
16692
16693
16694
16695
16696
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-3.1
+0.2
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-1.8
-0.1
N.D.
-0.3
growth on ypd
YPD
-0.2
-1.5
-0.4
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
-0.5
N.D.
-1.7
auxotrophy
YNB Glucose 75mM Arginine
-1.0
-0.2
-0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.1
+0.4
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.4
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.7
+0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.4
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.4
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.6
+0.0
N.D.
-0.8
growth on oleic acid
YNB Oleic Acid
-0.6
+0.5
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
-0.1
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.7
+0.4
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.3
+0.5
N.D.
-0.8
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.5
N.D.
-0.4
auxotrophy
YNB Glucose
-0.9
+1.2
-0.4
N.D.
-0.2
auxotrophy
Dropout Complete
-0.7
+0.7
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.9
+0.1
N.D.
+0.0
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