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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16693 and 16694 are separated by 810 nucleotides
16694 and 16695 are separated by 578 nucleotides
16695 and 16696 are separated by 186 nucleotides
16696 and 16697 are separated by 193 nucleotides
mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945,635 to 946,237
16693
mRNA_8326: 16694 - Hypothetical Protein, at 947,048 to 947,790
16694
mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948,369 to 949,936
16695
mRNA_8328: 16696 - Hypothetical Protein, at 950,123 to 950,641
16696
mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817
16697
Group
Condition
mRNA
_8325
mRNA
_8326
mRNA
_8327
mRNA
_8328
mRNA
_8329
16693
16694
16695
16696
16697
buoyancy on lipid accumulation
40 hrs High Buoyancy
-3.1
+0.2
N.D.
-0.4
-0.5
growth on ypd
YPD
-1.5
-0.4
N.D.
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-0.1
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
+0.4
N.D.
-0.5
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
N.D.
-1.7
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
N.D.
-0.5
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.0
N.D.
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.5
N.D.
-0.2
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
N.D.
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
N.D.
-0.4
-0.8
growth on oleic acid
YNB Glucose
+0.4
-0.2
N.D.
-0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
N.D.
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
N.D.
-0.4
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.3
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.0
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.5
N.D.
-0.8
+0.6
auxotrophy
YNB Glucose
+1.2
-0.4
N.D.
-0.2
+0.2
auxotrophy
Dropout Complete
+0.7
-0.1
N.D.
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.1
N.D.
+0.0
+0.4
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