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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16696 and 16697 are separated by 193 nucleotides
16697 and 16698 are separated by 65 nucleotides
16698 and 16699 are separated by 2215 nucleotides
16699 and 16700 are separated by 107 nucleotides
mRNA_8328: 16696 - Hypothetical Protein, at 950,123 to 950,641
16696
mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817
16697
mRNA_8330: 16698 - BLAST clp1-like protein [Schizophyllum commune H4-8], at 951,883 to 952,795
16698
mRNA_8331: 16699 - K02604 ORC2 origin recognition complex subunit 2, at 955,011 to 956,688
16699
mRNA_8332: 16700 - K10082 LMAN2, VIP36 lectin, mannose-binding 2, at 956,796 to 958,192
16700
Group
Condition
mRNA
_8328
mRNA
_8329
mRNA
_8330
mRNA
_8331
mRNA
_8332
16696
16697
16698
16699
16700
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.4
-0.7
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-1.2
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-1.1
-0.4
N.D.
+0.6
growth on ypd
YPD
-0.3
-0.7
-0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.9
+0.4
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
-0.4
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.3
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.8
+0.4
N.D.
+0.5
growth on oleic acid
YNB Glucose
-0.2
-0.7
+0.1
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.5
+0.2
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.3
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
-0.1
-0.5
-0.2
N.D.
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.4
N.D.
+1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.6
-0.2
N.D.
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
-0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.3
N.D.
+0.7
auxotrophy
YNB Glucose
-0.2
+0.2
-0.5
N.D.
+1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.1
+0.1
N.D.
+1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.2
N.D.
+1.3
auxotrophy
Dropout Complete
+0.1
+0.7
-0.3
N.D.
+1.0
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