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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16699 and 16700 are separated by 107 nucleotides
16700 and 16701 are separated by 364 nucleotides
16701 and 16702 are separated by 902 nucleotides
16702 and 16703 are separated by 693 nucleotides
mRNA_8331: 16699 - K02604 ORC2 origin recognition complex subunit 2, at 955,011 to 956,688
16699
mRNA_8332: 16700 - K10082 LMAN2, VIP36 lectin, mannose-binding 2, at 956,796 to 958,192
16700
mRNA_8333: 16701 - SUPERFAMILY--SSF55781, at 958,557 to 960,459
16701
mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961,362 to 964,238
16702
mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964,932 to 965,872
16703
Group
Condition
mRNA
_8331
mRNA
_8332
mRNA
_8333
mRNA
_8334
mRNA
_8335
16699
16700
16701
16702
16703
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
-0.0
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.6
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.6
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.3
-0.6
-0.2
growth on ypd
YPD
N.D.
-0.0
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.2
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.4
+0.5
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.5
-0.2
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.9
+0.0
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.7
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+1.3
-0.4
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.2
+0.8
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
+0.1
+0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
+0.2
+0.6
+0.0
auxotrophy
YNB Glucose
N.D.
+1.1
-0.2
+0.6
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
+0.3
+0.6
+0.1
auxotrophy
Dropout Complete
N.D.
+1.0
+0.1
+1.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.1
+0.2
+1.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.3
+0.2
+1.2
-0.1
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