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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16702 and 16703 are separated by 693 nucleotides
16703 and 16704 are separated by 346 nucleotides
16704 and 16705 are separated by 420 nucleotides
16705 and 16706 are separated by 532 nucleotides
mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961,362 to 964,238
16702
mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964,932 to 965,872
16703
mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966,219 to 967,737
16704
mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145
16705
mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361
16706
Group
Condition
mRNA
_8334
mRNA
_8335
mRNA
_8336
mRNA
_8337
mRNA
_8338
16702
16703
16704
16705
16706
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.1
+0.1
+0.2
-0.5
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.3
-0.1
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.1
+0.0
-0.4
-1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.1
+0.2
-0.2
-1.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.0
-0.1
+0.2
growth on ypd
YPD
-0.1
-0.1
+0.1
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
-0.2
+0.4
auxotrophy
YNB Glucose
+0.6
+0.2
-0.0
+0.0
-0.7
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.2
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
+0.2
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.3
+0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.4
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
+0.1
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.3
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
+0.1
+0.0
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.0
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+1.0
+0.2
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.2
+0.3
+0.2
-0.1
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