Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 16703 and 16704 are separated by 346 nucleotides16704 and 16705 are separated by 420 nucleotides16705 and 16706 are separated by 532 nucleotides16706 and 16707 are separated by 1076 nucleotides mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964,932 to 965,872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966,219 to 967,737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361 16706 mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707
Group Condition mRNA_8335 mRNA_8336 mRNA_8337 mRNA_8338 mRNA_8339
16703 16704 16705 16706 16707
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.2 -0.5 -1.9 +0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.0 -0.4 -1.5 +0.4
auxotrophy YNB Glucose +0.2 -0.0 +0.0 -0.7 -0.3
growth on ricinoleic acid YNB Glucose +0.1 +0.2 -0.2 -1.0 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.0 +0.2 +0.1 -0.7 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.2 +0.2 +0.3 -0.8
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.0 -0.1 +0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.1 -0.2 +0.4 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.1 +0.1 -0.1 -0.2
growth on oleic acid YNB Glucose +0.1 +0.2 -0.1 -0.3 +0.1
growth on oleic acid YNB Oleic Acid +0.1 +0.3 -0.1 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 -0.1 -0.1 +0.1 +0.6
growth on ypd YPD -0.1 +0.1 -0.2 +0.0 +0.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.3 -0.0 +0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 -0.1 +0.2 -0.0 +0.6
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.3 +0.2 -0.1 -0.2
auxotrophy Dropout Complete +0.2 +0.1 +0.0 -0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.4 -0.1 +0.1 +0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.1 +0.1 +0.3 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.3 +0.3 +0.5 +0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.1 +0.0 +0.6 +0.7
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