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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16704 and 16705 are separated by 420 nucleotides
16705 and 16706 are separated by 532 nucleotides
16706 and 16707 are separated by 1076 nucleotides
16707 and 16708 are separated by 115 nucleotides
mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966,219 to 967,737
16704
mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145
16705
mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361
16706
mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571
16707
mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357
16708
Group
Condition
mRNA
_8336
mRNA
_8337
mRNA
_8338
mRNA
_8339
mRNA
_8340
16704
16705
16706
16707
16708
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.5
-1.9
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
-1.5
+0.4
N.D.
auxotrophy
YNB Glucose
-0.0
+0.0
-0.7
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-1.0
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.7
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.3
-0.8
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.3
+0.1
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.4
-0.2
N.D.
growth on ypd
YPD
+0.1
-0.2
+0.0
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.5
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.6
+0.7
N.D.
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