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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16705 and 16706 are separated by 532 nucleotides
16706 and 16707 are separated by 1076 nucleotides
16707 and 16708 are separated by 115 nucleotides
16708 and 16709 are separated by 200 nucleotides
mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145
16705
mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361
16706
mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571
16707
mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357
16708
mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587
16709
Group
Condition
mRNA
_8337
mRNA
_8338
mRNA
_8339
mRNA
_8340
mRNA
_8341
16705
16706
16707
16708
16709
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.9
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-1.5
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
-0.7
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-1.0
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.7
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.3
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
-0.0
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.0
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.6
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.5
+0.6
N.D.
N.D.
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