Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 16705 and 16706 are separated by 532 nucleotides16706 and 16707 are separated by 1076 nucleotides16707 and 16708 are separated by 115 nucleotides16708 and 16709 are separated by 200 nucleotides mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361 16706 mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708 mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587 16709
Group Condition mRNA_8337 mRNA_8338 mRNA_8339 mRNA_8340 mRNA_8341
16705 16706 16707 16708 16709
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 -1.9 +0.3 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -1.5 +0.4 N.D. N.D.
auxotrophy YNB Glucose +0.0 -0.7 -0.3 N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.2 -1.0 +0.3 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.7 -0.3 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 +0.3 -0.8 N.D. N.D.
growth on oleic acid YNB Glucose -0.1 -0.3 +0.1 N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.1 -0.3 +0.1 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.1 -0.2 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.1 -0.2 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.2 -0.1 N.D. N.D.
auxotrophy Dropout Complete +0.0 -0.1 +0.1 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.4 -0.2 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.2 -0.0 N.D. N.D.
growth on ypd YPD -0.2 +0.0 +0.3 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.1 +0.2 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.1 +0.6 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.3 +0.2 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.0 +0.6 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 +0.6 +0.7 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.5 +0.6 N.D. N.D.
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