Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 16706 and 16707 are separated by 1076 nucleotides16707 and 16708 are separated by 115 nucleotides16708 and 16709 are separated by 200 nucleotides16709 and 16710 are separated by 275 nucleotides mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361 16706 mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708 mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587 16709 mRNA_8342: 16710 - Hypothetical Protein, at 981,863 to 982,243 16710
Group Condition mRNA_8338 mRNA_8339 mRNA_8340 mRNA_8341 mRNA_8342
16706 16707 16708 16709 16710
growth on ricinoleic acid YNB Ricinoleic Acid -1.9 +0.3 N.D. N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -1.5 +0.4 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.7 -0.3 N.D. N.D. N.D.
auxotrophy YNB Glucose -0.7 -0.3 N.D. N.D. N.D.
growth on ricinoleic acid YNB Glucose -1.0 +0.3 N.D. N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.8 N.D. N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.2 N.D. N.D. N.D.
growth on oleic acid YNB Glucose -0.3 +0.1 N.D. N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.3 +0.1 N.D. N.D. N.D.
auxotrophy Dropout Complete -0.1 +0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.0 N.D. N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.4 -0.2 N.D. N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.2 N.D. N.D. N.D.
growth on ypd YPD +0.0 +0.3 N.D. N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.3 +0.2 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 +0.6 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.6 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 +0.6 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 +0.7 N.D. N.D. N.D.
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