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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16715 and 16716 overlap by 2 nucleotides
16716 and 16717 are separated by 692 nucleotides
16717 and 16718 are separated by 1085 nucleotides
16718 and 16719 are separated by 117 nucleotides
mRNA_8347: 16715 - Hypothetical Protein, at 994,910 to 995,448
16715
mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995,447 to 998,474
16716
mRNA_8349: 16717 - K05349 bglX beta-glucosidase, at 999,167 to 1,002,495
16717
mRNA_8350: 16718 - K11397 EAF1, VID21 chromatin modification-related protein VID21, at 1,003,581 to 1,006,700
16718
mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012
16719
Group
Condition
mRNA
_8347
mRNA
_8348
mRNA
_8349
mRNA
_8350
mRNA
_8351
16715
16716
16717
16718
16719
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
-0.1
N.D.
-2.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.1
-0.1
N.D.
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
+0.2
N.D.
-2.2
auxotrophy
Dropout Complete
-0.1
-0.7
+0.1
N.D.
-1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
-0.1
N.D.
-0.9
growth on oleic acid
YNB Glucose
-0.1
-0.5
+0.1
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
-1.0
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.7
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
+0.0
N.D.
-0.1
growth on ypd
YPD
+0.3
+0.2
+0.1
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.0
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
+0.1
N.D.
+1.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
+0.2
N.D.
+0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
+0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
+0.3
N.D.
+1.5
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