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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16717 and 16718 are separated by 1085 nucleotides
16718 and 16719 are separated by 117 nucleotides
16719 and 16720 are separated by 967 nucleotides
16720 and 16721 are separated by 705 nucleotides
mRNA_8349: 16717 - K05349 bglX beta-glucosidase, at 999,167 to 1,002,495
16717
mRNA_8350: 16718 - K11397 EAF1, VID21 chromatin modification-related protein VID21, at 1,003,581 to 1,006,700
16718
mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012
16719
mRNA_8352: 16720 - Hypothetical Protein, at 1,012,980 to 1,013,679
16720
mRNA_8353: 16721 - BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos], at 1,014,385 to 1,015,330
16721
Group
Condition
mRNA
_8349
mRNA
_8350
mRNA
_8351
mRNA
_8352
mRNA
_8353
16717
16718
16719
16720
16721
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-2.5
-0.0
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-1.9
-0.1
-0.6
auxotrophy
Dropout Complete
+0.1
N.D.
-1.5
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-2.2
+0.2
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.9
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.6
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.6
+0.1
+0.1
growth on ypd
YPD
+0.1
N.D.
-0.9
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.1
+0.2
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.7
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.0
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+1.0
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.4
-0.0
+0.8
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.8
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
+1.5
+0.1
+0.0
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