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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16719 and 16720 are separated by 967 nucleotides
16720 and 16721 are separated by 705 nucleotides
16721 and 16722 are separated by 69 nucleotides
16722 and 16723 are separated by 527 nucleotides
mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012
16719
mRNA_8352: 16720 - Hypothetical Protein, at 1,012,980 to 1,013,679
16720
mRNA_8353: 16721 - BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos], at 1,014,385 to 1,015,330
16721
mRNA_8354: 16722 - K07734 paiB transcriptional regulator, at 1,015,400 to 1,016,161
16722
mRNA_8355: 16723 - KOG2111 Uncharacterized conserved protein, contains WD40 repeats, at 1,016,689 to 1,018,583
16723
Group
Condition
mRNA
_8351
mRNA
_8352
mRNA
_8353
mRNA
_8354
mRNA
_8355
16719
16720
16721
16722
16723
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
-0.1
-0.6
-0.1
-4.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.5
-0.0
-0.8
-0.4
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
+0.2
+0.6
-0.1
-1.1
auxotrophy
Dropout Complete
-1.5
+0.2
-0.3
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
+0.6
-1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.0
+0.1
+0.1
-0.5
auxotrophy
YNB Glucose
+0.1
+0.1
+0.0
-0.8
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.4
+0.2
+0.0
growth on ypd
YPD
-0.9
+0.2
+0.3
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.6
+0.1
+0.1
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.7
-0.7
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.2
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.7
+0.1
-0.2
-0.9
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.2
+0.2
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
+0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.1
+0.6
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.5
+0.1
+0.0
-0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
+0.4
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
+0.2
-0.1
-0.4
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
+0.8
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.8
+0.2
+0.1
+0.1
+0.6
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