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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16723 and 16724 are separated by 259 nucleotides
16724 and 16725 are separated by 355 nucleotides
16725 and 16726 are separated by 168 nucleotides
16726 and 16727 are separated by 89 nucleotides
mRNA_8355: 16723 - KOG2111 Uncharacterized conserved protein, contains WD40 repeats, at 1,016,689 to 1,018,583
16723
mRNA_8356: 16724 - K13985 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D, at 1,018,843 to 1,020,921
16724
mRNA_8357: 16725 - K01739 metB cystathionine gamma-synthase, at 1,021,277 to 1,023,018
16725
mRNA_8358: 16726 - HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657, at 1,023,187 to 1,029,066
16726
mRNA_8359: 16727 - Hypothetical Protein, at 1,029,156 to 1,031,168
16727
Group
Condition
mRNA
_8355
mRNA
_8356
mRNA
_8357
mRNA
_8358
mRNA
_8359
16723
16724
16725
16726
16727
facs on lipid accumulation
Sorted High BODIPY Gate
-4.9
+0.1
-0.6
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.9
-0.1
+0.0
-0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-1.2
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
-0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.1
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.1
+0.6
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.0
-0.6
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.0
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.1
-0.8
-0.0
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.1
+0.0
-0.2
auxotrophy
YNB Glucose
-0.2
-0.1
+0.4
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.6
+0.0
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
+0.6
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.4
-0.0
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
+0.5
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.5
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.9
-0.1
+0.2
growth on ypd
YPD
+0.3
+0.4
+0.4
+0.1
-0.2
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