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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16726 and 16727 are separated by 89 nucleotides
16727 and 16728 are separated by 44 nucleotides
16728 and 16729 are separated by 284 nucleotides
16729 and 16730 are separated by 558 nucleotides
mRNA_8358: 16726 - HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657, at 1,023,187 to 1,029,066
16726
mRNA_8359: 16727 - Hypothetical Protein, at 1,029,156 to 1,031,168
16727
mRNA_8360: 16728 - K02739 PSMB7 20S proteasome subunit beta 2, at 1,031,213 to 1,032,623
16728
mRNA_8361: 16729 - K06640 ATR serine/threonine-protein kinase ATR, at 1,032,908 to 1,038,730
16729
mRNA_8362: 16730 - Hypothetical Protein, at 1,039,289 to 1,041,924
16730
Group
Condition
mRNA
_8358
mRNA
_8359
mRNA
_8360
mRNA
_8361
mRNA
_8362
16726
16727
16728
16729
16730
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.4
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.1
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.7
N.D.
N.D.
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