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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16728 and 16729 are separated by 284 nucleotides
16729 and 16730 are separated by 558 nucleotides
16730 and 16731 are separated by 553 nucleotides
16731 and 16732 are separated by 122 nucleotides
mRNA_8360: 16728 - K02739 PSMB7 20S proteasome subunit beta 2, at 1,031,213 to 1,032,623
16728
mRNA_8361: 16729 - K06640 ATR serine/threonine-protein kinase ATR, at 1,032,908 to 1,038,730
16729
mRNA_8362: 16730 - Hypothetical Protein, at 1,039,289 to 1,041,924
16730
mRNA_8363: 16731 - KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins, at 1,042,478 to 1,043,371
16731
mRNA_8364: 16732 - K01488 add, ADA adenosine deaminase, at 1,043,494 to 1,044,920
16732
Group
Condition
mRNA
_8360
mRNA
_8361
mRNA
_8362
mRNA
_8363
mRNA
_8364
16728
16729
16730
16731
16732
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-1.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
-0.9
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
N.D.
-0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
N.D.
+1.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
N.D.
+0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
N.D.
+0.9
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.8
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
+0.7
+0.1
auxotrophy
YNB Glucose
+0.1
N.D.
N.D.
+1.2
-0.0
growth on ypd
YPD
+0.3
N.D.
N.D.
+1.1
-0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
N.D.
+0.9
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
N.D.
+0.9
+0.3
auxotrophy
Dropout Complete
+0.4
N.D.
N.D.
+1.5
-0.3
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
N.D.
+0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
+1.2
+0.3
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