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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16733 and 16734 are separated by 185 nucleotides
16734 and 16735 are separated by 180 nucleotides
16735 and 16736 are separated by 510 nucleotides
16736 and 16737 are separated by 122 nucleotides
mRNA_8365: 16733 - Hypothetical Protein, at 1,045,282 to 1,045,452
16733
mRNA_8366: 16734 - BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308], at 1,045,638 to 1,046,770
16734
mRNA_8367: 16735 - Hypothetical Protein, at 1,046,951 to 1,048,222
16735
mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1,048,733 to 1,050,184
16736
mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065
16737
Group
Condition
mRNA
_8365
mRNA
_8366
mRNA
_8367
mRNA
_8368
mRNA
_8369
16733
16734
16735
16736
16737
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.4
-1.1
-0.2
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-1.1
-0.3
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-1.0
-0.3
+0.1
-0.1
growth on ypd
YPD
-0.5
-0.3
-0.1
-1.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+1.2
-0.6
-0.5
-1.3
auxotrophy
YNB Glucose
+0.2
-0.1
-0.3
-0.7
-0.4
growth on ricinoleic acid
YNB Glucose
-0.7
+0.6
-0.2
-0.5
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+1.5
-0.5
-0.6
-1.7
auxotrophy
Dropout Complete
+0.5
-0.2
-0.3
-0.7
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.0
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.0
-0.4
-0.3
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.3
-0.3
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.7
-0.3
-0.2
-0.5
+0.0
growth on oleic acid
YNB Oleic Acid
+0.6
+0.5
-0.5
-0.8
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
-0.2
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
-0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.5
-0.2
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.9
-0.0
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.7
+0.0
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
+0.7
+0.1
+0.4
+0.4
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