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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16735 and 16736 are separated by 510 nucleotides
16736 and 16737 are separated by 122 nucleotides
16737 and 16738 are separated by 423 nucleotides
16738 and 16739 are separated by 169 nucleotides
mRNA_8367: 16735 - Hypothetical Protein, at 1,046,951 to 1,048,222
16735
mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1,048,733 to 1,050,184
16736
mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065
16737
mRNA_8370: 16738 - K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2, at 1,054,489 to 1,055,817
16738
mRNA_8371: 16739 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 1,055,987 to 1,057,436
16739
Group
Condition
mRNA
_8367
mRNA
_8368
mRNA
_8369
mRNA
_8370
mRNA
_8371
16735
16736
16737
16738
16739
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.6
-1.7
-0.1
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.5
-1.3
-0.5
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.2
+0.5
-3.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.5
-0.5
-0.0
-1.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.3
+0.3
-2.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
+0.5
-0.7
-2.0
growth on oleic acid
YNB Oleic Acid
-0.5
-0.8
-0.1
+0.3
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
-0.4
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.4
+0.2
-0.2
-1.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
-0.1
+0.5
-1.0
growth on oleic acid
YNB Glucose
-0.2
-0.5
+0.0
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
+0.2
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.4
+0.5
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.6
+0.3
+0.2
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
-0.1
+0.8
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.2
+0.1
+0.4
auxotrophy
YNB Glucose
-0.3
-0.7
-0.4
+0.7
+0.9
auxotrophy
Dropout Complete
-0.3
-0.7
-0.2
+0.4
+1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
-0.4
+1.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.4
+0.2
-0.2
growth on ypd
YPD
-0.1
-1.1
+0.1
-0.2
+2.6
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