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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16737 and 16738 are separated by 423 nucleotides
16738 and 16739 are separated by 169 nucleotides
16739 and 16740 are separated by 216 nucleotides
16740 and 16741 are separated by 183 nucleotides
mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065
16737
mRNA_8370: 16738 - K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2, at 1,054,489 to 1,055,817
16738
mRNA_8371: 16739 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 1,055,987 to 1,057,436
16739
mRNA_8372: 16740 - KOG1729 FYVE finger containing protein, at 1,057,653 to 1,060,208
16740
mRNA_8373: 16741 - KOG0504 FOG Ankyrin repeat, at 1,060,392 to 1,061,446
16741
Group
Condition
mRNA
_8369
mRNA
_8370
mRNA
_8371
mRNA
_8372
mRNA
_8373
16737
16738
16739
16740
16741
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
-0.1
-1.5
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.5
-1.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.7
-2.0
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.5
-1.0
-0.9
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-2.6
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
-3.1
+0.1
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-1.6
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
-1.1
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.7
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
-0.8
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.5
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-1.3
+0.2
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.5
-0.6
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.8
-0.4
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
-0.2
+0.1
+0.2
auxotrophy
YNB Glucose
-0.4
+0.7
+0.9
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+1.0
+0.7
-0.2
+0.3
auxotrophy
Dropout Complete
-0.2
+0.4
+1.2
-0.2
+0.3
growth on ypd
YPD
+0.1
-0.2
+2.6
+0.0
-0.1
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