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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16739 and 16740 are separated by 216 nucleotides
16740 and 16741 are separated by 183 nucleotides
16741 and 16742 are separated by 279 nucleotides
16742 and 16743 are separated by 793 nucleotides
mRNA_8371: 16739 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 1,055,987 to 1,057,436
16739
mRNA_8372: 16740 - KOG1729 FYVE finger containing protein, at 1,057,653 to 1,060,208
16740
mRNA_8373: 16741 - KOG0504 FOG Ankyrin repeat, at 1,060,392 to 1,061,446
16741
mRNA_8374: 16742 - KOG0053 Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,061,726 to 1,063,499
16742
mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1,064,293 to 1,065,552
16743
Group
Condition
mRNA
_8371
mRNA
_8372
mRNA
_8373
mRNA
_8374
mRNA
_8375
16739
16740
16741
16742
16743
ypd buoyancy
40 hrs High Buoyancy
-2.6
+0.0
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.9
-0.7
+0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-3.1
+0.1
+0.6
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.0
+0.0
-0.3
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.6
-0.1
+0.2
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
+0.0
+0.2
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-1.1
+0.1
+0.2
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-1.3
+0.2
+0.5
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
+0.1
+0.3
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
+0.1
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.1
+0.2
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.0
+0.2
-0.6
+0.1
growth on oleic acid
YNB Glucose
-0.5
-0.0
+0.1
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.6
+0.1
+0.2
-0.0
+0.1
auxotrophy
YNB Glucose
+0.9
-0.4
+0.0
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.1
+0.2
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.0
+0.1
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.7
-0.2
+0.3
-0.3
+0.1
auxotrophy
Dropout Complete
+1.2
-0.2
+0.3
-0.6
+0.0
growth on ypd
YPD
+2.6
+0.0
-0.1
-0.5
+0.0
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