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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16743 and 16744 are separated by 218 nucleotides
16744 and 16745 are separated by 147 nucleotides
16745 and 16746 are separated by 941 nucleotides
16746 and 16747 are separated by 1028 nucleotides
mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1,064,293 to 1,065,552
16743
mRNA_8376: 16744 - Hypothetical Protein, at 1,065,771 to 1,066,578
16744
mRNA_8377: 16745 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 1,066,726 to 1,069,498
16745
mRNA_8378: 16746 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 1,070,440 to 1,071,948
16746
mRNA_8379: 16747 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,072,977 to 1,073,638
16747
Group
Condition
mRNA
_8375
mRNA
_8376
mRNA
_8377
mRNA
_8378
mRNA
_8379
16743
16744
16745
16746
16747
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-2.3
-0.8
N.D.
N.D.
growth on ypd
YPD
+0.0
-0.7
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-1.4
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.7
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.4
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.8
+0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.4
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
+0.0
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.0
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+1.5
+0.1
N.D.
N.D.
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