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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16747 and 16748 are separated by 52 nucleotides
16748 and 16749 are separated by 214 nucleotides
16749 and 16750 are separated by 278 nucleotides
16750 and 16751 are separated by 56 nucleotides
mRNA_8379: 16747 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,072,977 to 1,073,638
16747
mRNA_8380: 16748 - KOG4197 FOG PPR repeat, at 1,073,691 to 1,078,543
16748
mRNA_8381: 16749 - Hypothetical Protein, at 1,078,758 to 1,080,099
16749
mRNA_8382: 16750 - K00799 GST, gst glutathione S-transferase, at 1,080,378 to 1,081,397
16750
mRNA_8383: 16751 - Interpro Stealth protein CR2, conserved region 2 Stealth protein CR3, conserved region 3, at 1,081,454 to 1,084,319
16751
Group
Condition
mRNA
_8379
mRNA
_8380
mRNA
_8381
mRNA
_8382
mRNA
_8383
16747
16748
16749
16750
16751
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.4
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.0
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.3
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.7
-0.1
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