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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16752 and 16753 are separated by 153 nucleotides
16753 and 16754 are separated by 1834 nucleotides
16754 and 16755 are separated by 1279 nucleotides
16755 and 16756 are separated by 108 nucleotides
mRNA_8384: 16752 - KOG4401 Uncharacterized conserved protein, at 1,084,970 to 1,085,744
16752
mRNA_8385: 16753 - HMMPfam-Protein of unknown function, DUF608-PF04685,HMMPfam-Bacterial alpha-L-rhamnosidase-PF05592,SUPERFAMILY--SSF48208, at 1,085,898 to 1,088,411
16753
mRNA_8386: 16754 - K02868 RP-L11e, RPL11 large subunit ribosomal protein L11e, at 1,090,246 to 1,091,683
16754
mRNA_8387: 16755 - Hypothetical Protein, at 1,092,963 to 1,094,682
16755
mRNA_8388: 16756 - Hypothetical Protein, at 1,094,791 to 1,097,376
16756
Group
Condition
mRNA
_8384
mRNA
_8385
mRNA
_8386
mRNA
_8387
mRNA
_8388
16752
16753
16754
16755
16756
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.5
N.D.
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.3
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
N.D.
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
N.D.
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.2
N.D.
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
+0.0
-0.2
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
+0.1
+0.2
growth on ypd
YPD
+0.3
+0.3
N.D.
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
N.D.
+0.0
+0.1
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