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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16756 and 16757 are separated by 1166 nucleotides
16757 and 16758 are separated by 151 nucleotides
16758 and 16759 are separated by 124 nucleotides
16759 and 16760 are separated by 262 nucleotides
mRNA_8388: 16756 - Hypothetical Protein, at 1,094,791 to 1,097,376
16756
mRNA_8389: 16757 - Hypothetical Protein, at 1,098,543 to 1,099,640
16757
mRNA_8390: 16758 - K00387 SUOX sulfite oxidase, at 1,099,792 to 1,101,469
16758
mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1,101,594 to 1,103,958
16759
mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536
16760
Group
Condition
mRNA
_8388
mRNA
_8389
mRNA
_8390
mRNA
_8391
mRNA
_8392
16756
16757
16758
16759
16760
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
+0.1
-0.1
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.2
-0.1
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.0
-0.1
-0.7
auxotrophy
YNB Glucose
+0.1
-0.0
+0.3
-0.3
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.2
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.1
+0.0
-0.4
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.1
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.4
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
-0.1
+0.0
-0.5
growth on ypd
YPD
+0.0
+0.3
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.5
-0.2
-0.2
auxotrophy
Dropout Complete
+0.2
+0.1
+0.5
-0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.0
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.0
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.7
+0.0
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
-0.1
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.0
-0.2
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.2
+0.1
+0.1
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