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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16757 and 16758 are separated by 151 nucleotides
16758 and 16759 are separated by 124 nucleotides
16759 and 16760 are separated by 262 nucleotides
16760 and 16761 are separated by 66 nucleotides
mRNA_8389: 16757 - Hypothetical Protein, at 1,098,543 to 1,099,640
16757
mRNA_8390: 16758 - K00387 SUOX sulfite oxidase, at 1,099,792 to 1,101,469
16758
mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1,101,594 to 1,103,958
16759
mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536
16760
mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1,108,603 to 1,114,039
16761
Group
Condition
mRNA
_8389
mRNA
_8390
mRNA
_8391
mRNA
_8392
mRNA
_8393
16757
16758
16759
16760
16761
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-0.1
-1.7
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.1
-0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
-0.1
-0.7
-0.1
auxotrophy
YNB Glucose
-0.0
+0.3
-0.3
-0.9
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.0
-0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
+0.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
-0.3
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.0
-0.4
-0.0
growth on ypd
YPD
+0.3
-0.1
-0.1
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
+0.5
-0.2
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.5
-0.2
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.0
-0.1
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
+0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.1
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.0
-0.2
+0.7
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
+0.1
+0.0
+0.3
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