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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16759 and 16760 are separated by 262 nucleotides
16760 and 16761 are separated by 66 nucleotides
16761 and 16762 are separated by 513 nucleotides
16762 and 16763 are separated by 105 nucleotides
mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1,101,594 to 1,103,958
16759
mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536
16760
mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1,108,603 to 1,114,039
16761
mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1,114,553 to 1,119,513
16762
mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1,119,619 to 1,120,614
16763
Group
Condition
mRNA
_8391
mRNA
_8392
mRNA
_8393
mRNA
_8394
mRNA
_8395
16759
16760
16761
16762
16763
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.7
-0.1
-0.7
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.5
+0.0
-1.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.1
-1.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
+0.2
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.3
-0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
+0.1
+0.5
-0.7
auxotrophy
YNB Glucose
-0.3
-0.9
+0.2
+0.6
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.7
-0.2
+0.9
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.7
+0.2
-0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
+0.0
-0.1
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.3
-0.1
+0.1
growth on ypd
YPD
-0.1
-0.3
+0.1
+0.6
+0.1
auxotrophy
Dropout Complete
-0.2
-0.6
+0.2
+0.7
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.2
+0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
-0.0
+0.7
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.7
-0.1
+1.3
+0.7
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.2
+0.6
+0.8
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.3
+1.0
+1.1
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