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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16760 and 16761 are separated by 66 nucleotides
16761 and 16762 are separated by 513 nucleotides
16762 and 16763 are separated by 105 nucleotides
16763 and 16764 are separated by 729 nucleotides
mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536
16760
mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1,108,603 to 1,114,039
16761
mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1,114,553 to 1,119,513
16762
mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1,119,619 to 1,120,614
16763
mRNA_8396: 16764 - HMMPfam-Ribosomal protein S8-PF00410,SUPERFAMILY--SSF56047, at 1,121,344 to 1,121,811
16764
Group
Condition
mRNA
_8392
mRNA
_8393
mRNA
_8394
mRNA
_8395
mRNA
_8396
16760
16761
16762
16763
16764
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-1.3
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.0
-1.0
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
-0.7
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
-0.6
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.1
-0.9
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.5
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
-0.2
+0.9
+0.8
N.D.
auxotrophy
YNB Glucose
-0.9
+0.2
+0.6
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.2
-0.0
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.0
-0.1
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
-0.1
+0.1
N.D.
growth on ypd
YPD
-0.3
+0.1
+0.6
+0.1
N.D.
auxotrophy
Dropout Complete
-0.6
+0.2
+0.7
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
-0.0
+0.7
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.7
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.1
+1.3
+0.7
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.6
+0.8
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+1.0
+1.1
N.D.
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