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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16766 and 16767 are separated by 2118 nucleotides
16767 and 16768 are separated by 304 nucleotides
16768 and 16769 are separated by 233 nucleotides
16769 and 16770 are separated by 118 nucleotides
mRNA_8398: 16766 - HMMPfam-Histone deacetylation protein Rxt3-PF08642, at 1,123,340 to 1,126,588
16766
mRNA_8399: 16767 - KOG1721 FOG Zn-finger, at 1,128,707 to 1,128,957
16767
mRNA_8400: 16768 - K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25, at 1,129,262 to 1,130,136
16768
mRNA_8401: 16769 - K16315 GSG2 serine/threonine-protein kinase haspin, at 1,130,370 to 1,132,967
16769
mRNA_8402: 16770 - K07579 K07579 putative methylase, at 1,133,086 to 1,134,230
16770
Group
Condition
mRNA
_8398
mRNA
_8399
mRNA
_8400
mRNA
_8401
mRNA
_8402
16766
16767
16768
16769
16770
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-2.2
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
N.D.
-0.8
-0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
-2.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.7
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.8
+0.3
-0.0
growth on ypd
YPD
+0.1
N.D.
-1.3
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.3
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.5
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.3
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.3
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.5
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.5
-0.4
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.5
-0.0
+0.9
auxotrophy
YNB Glucose
-0.0
N.D.
-0.3
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.1
-0.4
+0.5
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.7
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+1.0
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.3
-0.2
+0.5
auxotrophy
Dropout Complete
+0.3
N.D.
+0.5
-0.1
+0.6
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