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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16776 and 16777 are separated by 105 nucleotides
16777 and 16778 are separated by 461 nucleotides
16778 and 16779 are separated by 145 nucleotides
16779 and 16780 are separated by 77 nucleotides
mRNA_8408: 16776 - Hypothetical Protein, at 1,146,400 to 1,148,528
16776
mRNA_8409: 16777 - K09667 OGT protein O-GlcNAc transferase, at 1,148,634 to 1,155,172
16777
mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1,155,634 to 1,159,160
16778
mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1,159,306 to 1,160,640
16779
mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1,160,718 to 1,162,780
16780
Group
Condition
mRNA
_8408
mRNA
_8409
mRNA
_8410
mRNA
_8411
mRNA
_8412
16776
16777
16778
16779
16780
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-2.7
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-2.8
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
-2.8
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
-0.9
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.7
-0.6
+0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-1.0
+0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-1.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.4
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.7
+0.4
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.0
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.2
+0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
-0.0
+0.1
+0.0
auxotrophy
Dropout Complete
+0.5
-0.2
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose
+0.4
-0.1
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
-0.4
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.4
+0.4
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.4
+0.2
+0.0
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